Publications

Estimating the time-varying reproduction number for COVID-19 in South Africa during the first four waves using multiple measures of incidence for public and private sectors across four waves
Bingham JL, Tempia S, Moultrie H, Viboud C, Jassat W, Cohen C, Pulliam JRC

PLOS ONE

(2023)

https://doi.org/10.1371/journal.pone.0287026
Modelling presymptomatic Infectiousness in COVID-19
Cheng R, Dye C, Dagpunar JS, Williams BG

Journal of Simulation

(2023)

https://doi.org/10.1080/17477778.2023.2190467
Evidence of HIV incidence reduction in young women, but not in adolescent girls, in KwaZulu-Natal, South Africa
Mhlanga L, Welte A, Grebe PE, Ohler L, van Cutsem G, Huerga H, Conan N

IJID Regions

(2023)

https://doi.org/10.1016/j.ijregi.2023.07.004
Provision of HIV prevention and care services to farmworkers in sub-Saharan African countries
Mlangeni N, Adetokunboh OO, Lembani M, Maloltle M, Ngah V, Nyasulu PS

Tropical Medicine and International Health

(2023)

https://doi.org/10.1111/tmi.13922
Risk factors for breast cancer among women in Ekurhuleni Metropolitan Municipality, Gauteng province of South Africa, 2017‒2020: a case-control study
Mashele ZA, Zwane TB, Kuonza L, Muchengeti M, Motsuku L

ecancermedicalscience

(2023)

https://doi.org/10.3332/ecancer.2023.1593
The role of wastewater-based epidemiology for SARS-CoV-2 in developing countries: cumulative evidence from South Africa supports sentinel site surveillance to guide public health decision-making
Iwu-Jaja C, Ndlovu NL, Rachida S, Yousif M, Taukobong S, Macheke M, Mhlanga L, van Schalkwyk C, Pulliam JRC, Moultrie T, le Roux W, Schaefer L, Pocock G, Coetzee LZ, Mans J, Bux F, Pillay L, de Villiers D, du Toit AP, Jambo D, Gomba A, Groeninck S, Madgewick N, van der Walt M, Mutshembele A, Berkowitz N, Suchard M, McCarthy K

Science of the Total Environment

(2023)

https://doi.org/10.1016/j.scitotenv.2023.165817
What will it take for an injectable ARV to change the face of the HIV epidemic in high-prevalence countries? Considerations regarding drug costs and operations.
Meyer-Rath G, Jamieson L, Pillay Y

Journal of the International AIDS Society

(2023)

https://doi.org/10.1002/jia2.26106
The role of modelling in planning and budgeting for South Africa’s COVID-19 response
Silal SP, Pulliam JRC, Jamieson L, Nichols B, Moultrie H, Meyer-Rath G

PLOS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001063
Integration of point-of-care screening for type 2 diabetes mellitus and hypertension with COVID-19 rapid antigen screening in Johannesburg, South Africa
Brennan AT, Vetter B, Majam M, Msolomba VT, Venter F, Carmona S, Kao K, Gordon A, Meyer-Rath G

PLoS ONE

(2023)

https://doi.org/10.1371/journal.pone.0287794
The role of modelling and analytics in South African COVID-19 planning and budgeting
Meyer-Rath G, Hounsell RA, Pulliam JRC, Jamieson L, Nichols BE, Moultrie H, Silal SP

PLoS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001063
Deep learning approaches to landmark detection in tsetse wing images
Geldenhuys DS, Josias S, Brink W, Makhubele M, Hui C, Landi P, Bingham JL, Hargrove JW, Hazelbag CM

PLoS Computational Biology

(2023)

https://doi.org/10.1371/journal.pcbi.1011194
Evaluation of Ortho VITROS and Roche Elecsys S and NC Immunoassays for SARS-CoV-2 Serosurveillance Applications
Sulaeman H, Grebe PE, Dave H, McCann L, Di Germanio C, Sanghavi A, Sclar V, Bougie DW, Chatelain G, Biggerstaff BJ, Jones JM, Thornburg NJ, Kleinman S, Stone M, Busch MP

Microbiology Spectrum

(2023)

https://doi.org/10.1128/spectrum.03234-22
Neonatal sepsis: Challenges in data access, harmonisation and analysis to inform empirical antibiotic recommendations in South African neonatal units
Bolton L, Bekker A, Govender N, van Schalkwyk C, Whitelaw A, Dramowski A

Southern African Journal of Public Health

(2023)

https://doi.org/10.7196/SAJPH.2023.v6.i2.175
Investigating the unaccounted ones: insights on age-dependent reproductive loss in a viviparous fly
English S, Barreaux AMG, Leyland R, Lord JL, Hargrove JW, Vale GA, Haines L

Frontiers in Ecology and Evolution

(2023)

https://doi.org/10.3389/fevo.2023.1057474
Differential in-hospital mortality and intensive care treatment over time: Informing hospital pathways for modelling COVID-19 in South Africa
Jamieson L, van Schalkwyk C, Nichols BE, Meyer-Rath G, Silal SP, Pulliam JRC, Blumberg L, Cohen C, Moultrie H, Jassat W

PLoS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001073
Improved models for the relationship between age and the probability of trypanosome infection in female tsetse, Glossina pallidipes Austen
Hargrove JW, van Sickle J

Bulletin of Entomological Research

(2023)

https://doi.org/10.1017/S0007485323000159
Multiple models for outbreak decision support in the face of uncertainty
Shea K, Borchering RK, Probert WJM, Howerton E, Bogich T, Li S, Van Panhuis WG, Viboud C, Aguas R, Pearson CAB, et al

Proceedings of the National Academy of Sciences

(2023)

https://doi.org/10.1073/pnas.2207537120
Human exposure to bats, rodents and monkeys in Bangladesh
Shanta IS, Luby SP, Hossain K, Heffelfinger JD, Kilpatrick AM, Haider N, Rahman T, Chakma S, Ahmed SSU

EcoHealth

(2023)

https://doi.org/10.1007/s10393-023-01628-9
The National COVID-19 Epi Model (NCEM): estimating cases, admissions and deaths for the first wave of COVID-19 in South Africa
Silal SP, Pulliam JRC, Meyer-Rath G, Jamieson L, Nichols BE, Norman J, Hounsell R, Mayet S, Kagoro F, Moultrie H

PLoS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001070
Socio-economic inequalities in the double burden of malnutrition among under-five children: evidence from 10 selected sub-Saharan African countries
Alaba OA, Chiwire P, Siya A, Saliu OA, Nhakaniso K, Nzeribe E, Okova D, Lukwa AT

International Journal of Environmental Research and Public Health

(2023)

https://doi.org/10.3390/ijerph20085489
Improved estimates of abortion rates in tsetse (Glossina spp.)
Hargrove JW

Medical and Veterinary Entomology

(2023)

https://doi.org/10.1111/mve.12659
What, how and who: Cost-effectiveness analyses of COVID-19 vaccination to inform key policies in Nigeria
Ruiz F, Torres-Rueda S, Pearson CAB, Bergren E, Okeke C, Procter SR, Madriz-Montero A, Jit M, Vassall A, Uzochukwu B

PLOS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001693
Assessing the impacts of COVID-19 vaccination programme’s timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African countries
Liu Y, Procter SR, Pearson CAB, Montero AM, Torres-Rueda S, Asfaw E, Uzochukwu B, Drake T, Bergren E, Eggo RE, Ruiz F, Ndembi N, Nonvignon J, Jit M, Vassall A

BMC Medicine

(2023)

https://doi.org/10.1186/s12916-023-02784-z
Impact of interventions for tuberculosis prevention and care in South Africa – a systematic review of mathematical modelling studies
Brown LR, van Schalkwyk C, de Villiers AK, Marx FM

South African Medical Journal

(2023)

https://doi.org/10.7196/SAMJ.2023.v113i3.16812
A systematic review of risk factors for mortality among tuberculosis patients in South Africa
Nicholson TJ, Hoddinott G, Seddon JA, Claassens MM, van der Zalm MM, Lopez E, Bock P, Caldwell J, Da Costa D, de Vaal C, Dunbar R, Du Preez K, Hesseling AC, Joseph K, Kriel E, Loveday M, Marx FM, Meehan SA, Purchase S, Naidoo K, Naidoo L, Solomon-Da Costa F, Sloot R, Osman M

Systematic Reviews

(2023)

https://doi.org/10.1186/s13643-023-02175-8

Previous 123 Next

Publications

Estimating the time-varying reproduction number for COVID-19 in South Africa during the first four waves using multiple measures of incidence for public and private sectors across four waves

Modelling presymptomatic Infectiousness in COVID-19

Evidence of HIV incidence reduction in young women, but not in adolescent girls, in KwaZulu-Natal, South Africa

Provision of HIV prevention and care services to farmworkers in sub-Saharan African countries

Risk factors for breast cancer among women in Ekurhuleni Metropolitan Municipality, Gauteng province of South Africa, 2017‒2020: a case-control study

The role of wastewater-based epidemiology for SARS-CoV-2 in developing countries: cumulative evidence from South Africa supports sentinel site surveillance to guide public health decision-making

What will it take for an injectable ARV to change the face of the HIV epidemic in high-prevalence countries? Considerations regarding drug costs and operations.

The role of modelling in planning and budgeting for South Africa’s COVID-19 response

Integration of point-of-care screening for type 2 diabetes mellitus and hypertension with COVID-19 rapid antigen screening in Johannesburg, South Africa

The role of modelling and analytics in South African COVID-19 planning and budgeting

Deep learning approaches to landmark detection in tsetse wing images

Evaluation of Ortho VITROS and Roche Elecsys S and NC Immunoassays for SARS-CoV-2 Serosurveillance Applications

Neonatal sepsis: Challenges in data access, harmonisation and analysis to inform empirical antibiotic recommendations in South African neonatal units

Investigating the unaccounted ones: insights on age-dependent reproductive loss in a viviparous fly

Differential in-hospital mortality and intensive care treatment over time: Informing hospital pathways for modelling COVID-19 in South Africa

Improved models for the relationship between age and the probability of trypanosome infection in female tsetse, Glossina pallidipes Austen

Multiple models for outbreak decision support in the face of uncertainty

Human exposure to bats, rodents and monkeys in Bangladesh

The National COVID-19 Epi Model (NCEM): estimating cases, admissions and deaths for the first wave of COVID-19 in South Africa

Socio-economic inequalities in the double burden of malnutrition among under-five children: evidence from 10 selected sub-Saharan African countries

Improved estimates of abortion rates in tsetse (Glossina spp.)

What, how and who: Cost-effectiveness analyses of COVID-19 vaccination to inform key policies in Nigeria

Assessing the impacts of COVID-19 vaccination programme’s timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African countries

Impact of interventions for tuberculosis prevention and care in South Africa – a systematic review of mathematical modelling studies

A systematic review of risk factors for mortality among tuberculosis patients in South Africa

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